J3_9SRD_020

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)G*CGA(A2M)ACC*GGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|4AC|53
9SRD|1|2|G|54
*
9SRD|1|2|C|370
9SRD|1|2|G|371
9SRD|1|2|A|372
9SRD|1|2|A2M|373
9SRD|1|2|A|374
9SRD|1|2|C|375
9SRD|1|2|C|376
*
9SRD|1|2|G|402
9SRD|1|2|G|403
9SRD|1|2|G|404

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AN

30S ribosomal protein S12