J3_9SRD_022

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

9SRD|1|2|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|552
9SRD|1|2|G|553
9SRD|1|2|G|554
*
9SRD|1|2|C|618
9SRD|1|2|U|619
9SRD|1|2|U|620
9SRD|1|2|G|621
*
9SRD|1|2|C|721
9SRD|1|2|G|722

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AI

30S ribosomal protein S8

Chain AN

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S15

Chain AR

30S ribosomal protein S17

Chain AW

30S ribosomal protein S27e