J3_9SRD_025

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUAG*(4AC)G(OMU)AG*(4AC)GUUAAG

Length

16 nucleotides

Bulged bases

9SRD|1|2|U|842, 9SRD|1|2|A|844

QA status

Modified nucleotides: 4AC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|793
9SRD|1|2|U|794
9SRD|1|2|A|795
9SRD|1|2|G|796
*
9SRD|1|2|4AC|828
9SRD|1|2|G|829
9SRD|1|2|OMU|830
9SRD|1|2|A|831
9SRD|1|2|G|832
*
9SRD|1|2|4AC|839
9SRD|1|2|G|840
9SRD|1|2|U|841
9SRD|1|2|U|842
9SRD|1|2|A|843
9SRD|1|2|A|844
9SRD|1|2|G|845

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AC

Zn-ribbon RNA-binding protein involved in translation

Chain AF

30S ribosomal protein S5

Chain AI

30S ribosomal protein S8

Chain AN

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S15