J3_9SRD_026

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|908
9SRD|1|2|A|909
9SRD|1|2|A|910
9SRD|1|2|G|911
*
9SRD|1|2|C|1318
9SRD|1|2|U|1319
9SRD|1|2|A|1320
9SRD|1|2|G|1321
9SRD|1|2|U|1322
9SRD|1|2|A|1323
9SRD|1|2|C|1324
9SRD|1|2|C|1325
*
9SRD|1|2|G|1345
9SRD|1|2|C|1346
9SRD|1|2|G|1347
9SRD|1|2|A|1348
9SRD|1|2|A|1349
9SRD|1|2|U|1350
9SRD|1|2|A|1351
9SRD|1|2|C|1352
9SRD|1|2|G|1353

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AX

30S ribosomal protein S28e