J3_9SRD_028

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUUAAUU(OMG)*CGGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

9SRD|1|2|G|946, 9SRD|1|2|G|948, 9SRD|1|2|A|950

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|U|927
9SRD|1|2|U|928
9SRD|1|2|U|929
9SRD|1|2|A|930
9SRD|1|2|A|931
9SRD|1|2|U|932
9SRD|1|2|U|933
9SRD|1|2|OMG|934
*
9SRD|1|2|C|945
9SRD|1|2|G|946
9SRD|1|2|G|947
9SRD|1|2|G|948
9SRD|1|2|A|949
9SRD|1|2|A|950
9SRD|1|2|C|951
9SRD|1|2|C|952
9SRD|1|2|U|953
9SRD|1|2|C|954
9SRD|1|2|A|955
9SRD|1|2|C|956
*
9SRD|1|2|G|1195
9SRD|1|2|G|1196
9SRD|1|2|C|1197
9SRD|1|2|U|1198
9SRD|1|2|A|1199

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AL

30S ribosomal protein S10

Chain AO

30S ribosomal protein S13

Chain AP

30S ribosomal protein S14 type Z

Chain AT

30S ribosomal protein S19

Chain H

Dehydrogenase