J3_9SRD_031

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UA(OMC)*GCGUC*GUAA

Length

12 nucleotides

Bulged bases

9SRD|1|2|A|1066

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|U|1038
9SRD|1|2|A|1039
9SRD|1|2|OMC|1040
*
9SRD|1|2|G|1047
9SRD|1|2|C|1048
9SRD|1|2|G|1049
9SRD|1|2|U|1050
9SRD|1|2|C|1051
*
9SRD|1|2|G|1064
9SRD|1|2|U|1065
9SRD|1|2|A|1066
9SRD|1|2|A|1067

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AF

30S ribosomal protein S5