J3_9SRD_033

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGGG

Length

20 nucleotides

Bulged bases

9SRD|1|2|G|1157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|1081
9SRD|1|2|G|1082
9SRD|1|2|C|1083
*
9SRD|1|2|G|1129
9SRD|1|2|G|1130
9SRD|1|2|A|1131
9SRD|1|2|C|1132
9SRD|1|2|U|1133
9SRD|1|2|G|1134
9SRD|1|2|C|1135
*
9SRD|1|2|G|1149
9SRD|1|2|A|1150
9SRD|1|2|G|1151
9SRD|1|2|G|1152
9SRD|1|2|A|1153
9SRD|1|2|A|1154
9SRD|1|2|G|1155
9SRD|1|2|G|1156
9SRD|1|2|G|1157
9SRD|1|2|G|1158

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AL

30S ribosomal protein S10

Chain AP

30S ribosomal protein S14 type Z

Chain AS

30S ribosomal protein S17e