J3_9SRD_034

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

9SRD|1|2|U|1214, 9SRD|1|2|U|1276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|1211
9SRD|1|2|A|1212
9SRD|1|2|A|1213
9SRD|1|2|U|1214
9SRD|1|2|G|1215
*
9SRD|1|2|C|1270
9SRD|1|2|U|1271
9SRD|1|2|C|1272
9SRD|1|2|A|1273
9SRD|1|2|G|1274
9SRD|1|2|U|1275
9SRD|1|2|U|1276
9SRD|1|2|C|1277
*
9SRD|1|2|G|1308
9SRD|1|2|C|1309
9SRD|1|2|U|1310
9SRD|1|2|G|1311

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AO

30S ribosomal protein S13

Chain AU

30S ribosomal protein S19e

Chain H

Dehydrogenase