J3_9SRE_005
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GC*GAUAAGC*GAUUC
- Length
- 14 nucleotides
- Bulged bases
- 9SRE|1|1|U|186, 9SRE|1|1|A|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRE_005 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0573
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRE|1|1|G|170
9SRE|1|1|C|171
*
9SRE|1|1|G|184
9SRE|1|1|A|185
9SRE|1|1|U|186
9SRE|1|1|A|187
9SRE|1|1|A|188
9SRE|1|1|G|189
9SRE|1|1|C|190
*
9SRE|1|1|G|223
9SRE|1|1|A|224
9SRE|1|1|U|225
9SRE|1|1|U|226
9SRE|1|1|C|227
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BT
- Large ribosomal subunit protein uL23
- Chain BW
- Large ribosomal subunit protein uL29
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
Coloring options: