J3_9SRE_006
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GUA*UGAGUAC*GGAAGC
- Length
- 16 nucleotides
- Bulged bases
- 9SRE|1|1|U|417, 9SRE|1|1|G|527
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|1|G|416
9SRE|1|1|U|417
9SRE|1|1|A|418
*
9SRE|1|1|U|526
9SRE|1|1|G|527
9SRE|1|1|A|528
9SRE|1|1|G|529
9SRE|1|1|U|530
9SRE|1|1|A|531
9SRE|1|1|C|532
*
9SRE|1|1|G|553
9SRE|1|1|G|554
9SRE|1|1|A|555
9SRE|1|1|A|556
9SRE|1|1|G|557
9SRE|1|1|C|558
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Bk
- C2H2-type domain-containing protein
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