J3_9SRE_008
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 9SRE|1|1|U|935, 9SRE|1|1|G|1043, 9SRE|1|1|A|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRE_008 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.0967
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRE|1|1|C|932
9SRE|1|1|G|933
9SRE|1|1|A|934
9SRE|1|1|U|935
9SRE|1|1|C|936
9SRE|1|1|U|937
9SRE|1|1|A|938
*
9SRE|1|1|U|1024
9SRE|1|1|A|1025
9SRE|1|1|G|1026
*
9SRE|1|1|C|1042
9SRE|1|1|G|1043
9SRE|1|1|A|1044
9SRE|1|1|G|1045
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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