J3_9SRE_010
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CCUUAGACAGCGGGGA*UUUAAAGAGUG*CUCACCCGUCGAGG
- Length
- 41 nucleotides
- Bulged bases
- 9SRE|1|1|U|1300, 9SRE|1|1|A|1343, 9SRE|1|1|G|1362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|1|C|1297
9SRE|1|1|C|1298
9SRE|1|1|U|1299
9SRE|1|1|U|1300
9SRE|1|1|A|1301
9SRE|1|1|G|1302
9SRE|1|1|A|1303
9SRE|1|1|C|1304
9SRE|1|1|A|1305
9SRE|1|1|G|1306
9SRE|1|1|C|1307
9SRE|1|1|G|1308
9SRE|1|1|G|1309
9SRE|1|1|G|1310
9SRE|1|1|G|1311
9SRE|1|1|A|1312
*
9SRE|1|1|U|1336
9SRE|1|1|U|1337
9SRE|1|1|U|1338
9SRE|1|1|A|1339
9SRE|1|1|A|1340
9SRE|1|1|A|1341
9SRE|1|1|G|1342
9SRE|1|1|A|1343
9SRE|1|1|G|1344
9SRE|1|1|U|1345
9SRE|1|1|G|1346
*
9SRE|1|1|C|1355
9SRE|1|1|U|1356
9SRE|1|1|C|1357
9SRE|1|1|A|1358
9SRE|1|1|C|1359
9SRE|1|1|C|1360
9SRE|1|1|C|1361
9SRE|1|1|G|1362
9SRE|1|1|U|1363
9SRE|1|1|C|1364
9SRE|1|1|G|1365
9SRE|1|1|A|1366
9SRE|1|1|G|1367
9SRE|1|1|G|1368
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BN
- Large ribosomal subunit protein uL16
- Chain Bl
- Large ribosomal subunit protein eL20
Coloring options: