J3_9SRE_012
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GCCAG*(4AC)GAGAAC*GUGCC
- Length
- 17 nucleotides
- Bulged bases
- 9SRE|1|1|G|1881, 9SRE|1|1|A|1882
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|1|G|1564
9SRE|1|1|C|1565
9SRE|1|1|C|1566
9SRE|1|1|A|1567
9SRE|1|1|G|1568
*
9SRE|1|1|4AC|1878
9SRE|1|1|G|1879
9SRE|1|1|A|1880
9SRE|1|1|G|1881
9SRE|1|1|A|1882
9SRE|1|1|A|1883
9SRE|1|1|C|1884
*
9SRE|1|1|G|1893
9SRE|1|1|U|1894
9SRE|1|1|G|1895
9SRE|1|1|C|1896
9SRE|1|1|C|1897
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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