J3_9SRE_021

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

(4AC)GACUAAG*CGCGA(A2M)ACC*GGG

Length

20 nucleotides

Bulged bases

9SRE|1|2|A|59

QA status

Modified nucleotides: 4AC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|4AC|53
9SRE|1|2|G|54
9SRE|1|2|A|55
9SRE|1|2|C|56
9SRE|1|2|U|57
9SRE|1|2|A|58
9SRE|1|2|A|59
9SRE|1|2|G|60
*
9SRE|1|2|C|368
9SRE|1|2|G|369
9SRE|1|2|C|370
9SRE|1|2|G|371
9SRE|1|2|A|372
9SRE|1|2|A2M|373
9SRE|1|2|A|374
9SRE|1|2|C|375
9SRE|1|2|C|376
*
9SRE|1|2|G|402
9SRE|1|2|G|403
9SRE|1|2|G|404

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e

Chain AN

30S ribosomal protein S12