J3_9SRE_024

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GG*CGCCAGUGG*CGC

Length

14 nucleotides

Bulged bases

9SRE|1|2|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|G|639
9SRE|1|2|G|640
*
9SRE|1|2|C|684
9SRE|1|2|G|685
9SRE|1|2|C|686
9SRE|1|2|C|687
9SRE|1|2|A|688
9SRE|1|2|G|689
9SRE|1|2|U|690
9SRE|1|2|G|691
9SRE|1|2|G|692
*
9SRE|1|2|C|699
9SRE|1|2|G|700
9SRE|1|2|C|701

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AA

30S ribosomal protein S3Ae

Chain AM

30S ribosomal protein S11

Chain AQ

30S ribosomal protein S15