J3_9SRE_025
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CUAG*(4AC)G(OMU)AG*(4AC)GUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9SRE|1|2|U|842, 9SRE|1|2|A|844
- QA status
- Modified nucleotides: 4AC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|2|C|793
9SRE|1|2|U|794
9SRE|1|2|A|795
9SRE|1|2|G|796
*
9SRE|1|2|4AC|828
9SRE|1|2|G|829
9SRE|1|2|OMU|830
9SRE|1|2|A|831
9SRE|1|2|G|832
*
9SRE|1|2|4AC|839
9SRE|1|2|G|840
9SRE|1|2|U|841
9SRE|1|2|U|842
9SRE|1|2|A|843
9SRE|1|2|A|844
9SRE|1|2|G|845
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain AB
- 30S ribosomal protein S2
- Chain AC
- Zn-ribbon RNA-binding protein involved in translation
- Chain AF
- 30S ribosomal protein S5
- Chain AI
- 30S ribosomal protein S8
- Chain AN
- 30S ribosomal protein S12
- Chain AQ
- 30S ribosomal protein S15
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