J3_9SRE_026

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|C|908
9SRE|1|2|A|909
9SRE|1|2|A|910
9SRE|1|2|G|911
*
9SRE|1|2|C|1318
9SRE|1|2|U|1319
9SRE|1|2|A|1320
9SRE|1|2|G|1321
9SRE|1|2|U|1322
9SRE|1|2|A|1323
9SRE|1|2|C|1324
9SRE|1|2|C|1325
*
9SRE|1|2|G|1345
9SRE|1|2|C|1346
9SRE|1|2|G|1347
9SRE|1|2|A|1348
9SRE|1|2|A|1349
9SRE|1|2|U|1350
9SRE|1|2|A|1351
9SRE|1|2|C|1352
9SRE|1|2|G|1353

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AU

30S ribosomal protein S19e

Chain AX

30S ribosomal protein S28e