J3_9SRE_028

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UUUAAUU(OMG)*CGGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

9SRE|1|2|G|946, 9SRE|1|2|G|948, 9SRE|1|2|A|950

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|U|927
9SRE|1|2|U|928
9SRE|1|2|U|929
9SRE|1|2|A|930
9SRE|1|2|A|931
9SRE|1|2|U|932
9SRE|1|2|U|933
9SRE|1|2|OMG|934
*
9SRE|1|2|C|945
9SRE|1|2|G|946
9SRE|1|2|G|947
9SRE|1|2|G|948
9SRE|1|2|A|949
9SRE|1|2|A|950
9SRE|1|2|C|951
9SRE|1|2|C|952
9SRE|1|2|U|953
9SRE|1|2|C|954
9SRE|1|2|A|955
9SRE|1|2|C|956
*
9SRE|1|2|G|1195
9SRE|1|2|G|1196
9SRE|1|2|C|1197
9SRE|1|2|U|1198
9SRE|1|2|A|1199

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AL

30S ribosomal protein S10

Chain AO

30S ribosomal protein S13

Chain AP

30S ribosomal protein S14 type Z

Chain AT

30S ribosomal protein S19

Chain H

Dehydrogenase