J3_9SRE_029

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GCGAC*GAGAG*(4AC)GAAAC

Length

16 nucleotides

Bulged bases

9SRE|1|2|A|1188

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|G|962
9SRE|1|2|C|963
9SRE|1|2|G|964
9SRE|1|2|A|965
9SRE|1|2|C|966
*
9SRE|1|2|G|1008
9SRE|1|2|A|1009
9SRE|1|2|G|1010
9SRE|1|2|A|1011
9SRE|1|2|G|1012
*
9SRE|1|2|4AC|1184
9SRE|1|2|G|1185
9SRE|1|2|A|1186
9SRE|1|2|A|1187
9SRE|1|2|A|1188
9SRE|1|2|C|1189

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AP

30S ribosomal protein S14 type Z