J3_9SRE_030
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- (4AC)GUCAG*CGAGAC*GCGACG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|2|4AC|1028
9SRE|1|2|G|1029
9SRE|1|2|U|1030
9SRE|1|2|C|1031
9SRE|1|2|A|1032
9SRE|1|2|G|1033
*
9SRE|1|2|C|1072
9SRE|1|2|G|1073
9SRE|1|2|A|1074
9SRE|1|2|G|1075
9SRE|1|2|A|1076
9SRE|1|2|C|1077
*
9SRE|1|2|G|1162
9SRE|1|2|C|1163
9SRE|1|2|G|1164
9SRE|1|2|A|1165
9SRE|1|2|C|1166
9SRE|1|2|G|1167
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain AF
- 30S ribosomal protein S5
- Chain AK
- 30S ribosomal protein S9
- Chain AL
- 30S ribosomal protein S10
- Chain AP
- 30S ribosomal protein S14 type Z
- Chain AS
- 30S ribosomal protein S17e
- Chain AZ
- 30S ribosomal protein S3
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