J3_9SRO_030

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

9SRO|1|a|U|2334, 9SRO|1|a|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRO|1|a|C|2295
9SRO|1|a|U|2296
9SRO|1|a|A|2297
9SRO|1|a|A|2298
9SRO|1|a|U|2299
*
9SRO|1|a|A|2317
9SRO|1|a|G|2318
9SRO|1|a|G|2319
9SRO|1|a|U|2320
9SRO|1|a|U|2321
9SRO|1|a|A|2322
9SRO|1|a|G|2323
*
9SRO|1|a|C|2332
9SRO|1|a|A|2333
9SRO|1|a|U|2334
9SRO|1|a|A|2335
9SRO|1|a|A|2336
9SRO|1|a|G|2337

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27