J3_9SRO_033

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9SRO|1|a|U|2833, 9SRO|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRO|1|a|G|2812
9SRO|1|a|A|2813
9SRO|1|a|A|2814
9SRO|1|a|C|2815
*
9SRO|1|a|G|2831
9SRO|1|a|U|2832
9SRO|1|a|U|2833
9SRO|1|a|G|2834
9SRO|1|a|A|2835
9SRO|1|a|U|2836
*
9SRO|1|a|A|2882
9SRO|1|a|A|2883
9SRO|1|a|U|2884
9SRO|1|a|G|2885
9SRO|1|a|A|2886
9SRO|1|a|A|2887
9SRO|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32