J3_9SS0_011

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUCC*GGAGACUGC*GAGGAAGGUG

Length

24 nucleotides

Bulged bases

9SS0|1|D1|U|1183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS0|1|D1|U|1116
9SS0|1|D1|A|1117
9SS0|1|D1|U|1118
9SS0|1|D1|C|1119
9SS0|1|D1|C|1120
*
9SS0|1|D1|G|1153
9SS0|1|D1|G|1154
9SS0|1|D1|A|1155
9SS0|1|D1|G|1156
9SS0|1|D1|A|1157
9SS0|1|D1|C|1158
9SS0|1|D1|U|1159
9SS0|1|D1|G|1160
9SS0|1|D1|C|1161
*
9SS0|1|D1|G|1175
9SS0|1|D1|A|1176
9SS0|1|D1|G|1177
9SS0|1|D1|G|1178
9SS0|1|D1|A|1179
9SS0|1|D1|A|1180
9SS0|1|D1|G|1181
9SS0|1|D1|G|1182
9SS0|1|D1|U|1183
9SS0|1|D1|G|1184

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9