J3_9SS1_003
3D structure
- PDB id
- 9SS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- 9SS1|1|D1|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS1_003 not in the Motif Atlas
- Geometric match to J3_8B0X_002
- Geometric discrepancy: 0.0897
- The information below is about J3_8B0X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.2
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9SS1|1|D1|C|586
9SS1|1|D1|G|587
9SS1|1|D1|G|588
*
9SS1|1|D1|C|651
9SS1|1|D1|U|652
9SS1|1|D1|U|653
9SS1|1|D1|G|654
*
9SS1|1|D1|C|754
9SS1|1|D1|G|755
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AG
- Small ribosomal subunit protein uS8
- Chain AK
- Small ribosomal subunit protein uS12
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AP
- Small ribosomal subunit protein uS17
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