J3_9SS5_002
3D structure
- PDB id
- 9SS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit in rimM-KO with RsfS (+H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9SS5|1|D2|A|504, 9SS5|1|D2|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS5_002 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.1755
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9SS5|1|D2|G|30
9SS5|1|D2|C|31
*
9SS5|1|D2|G|474
9SS5|1|D2|C|475
9SS5|1|D2|G|476
9SS5|1|D2|A|477
9SS5|1|D2|A|478
9SS5|1|D2|A|479
9SS5|1|D2|A|480
9SS5|1|D2|G|481
9SS5|1|D2|A|482
9SS5|1|D2|A|483
9SS5|1|D2|C|484
*
9SS5|1|D2|G|496
9SS5|1|D2|A|497
9SS5|1|D2|G|498
9SS5|1|D2|U|499
9SS5|1|D2|G|500
9SS5|1|D2|A|501
9SS5|1|D2|A|502
9SS5|1|D2|A|503
9SS5|1|D2|A|504
9SS5|1|D2|A|505
9SS5|1|D2|G|506
9SS5|1|D2|A|507
9SS5|1|D2|A|508
9SS5|1|D2|C|509
9SS5|1|D2|C|510
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BV
- Large ribosomal subunit protein uL22
- Chain BX
- Large ribosomal subunit protein uL24
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