J3_9SS5_006

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9SS5|1|D2|U|686, 9SS5|1|D2|A|792, 9SS5|1|D2|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS5_006 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1832

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

9SS5|1|D2|U|683
9SS5|1|D2|G|684
9SS5|1|D2|A|685
9SS5|1|D2|U|686
9SS5|1|D2|C|687
9SS5|1|D2|U|688
9SS5|1|D2|A|689
*
9SS5|1|D2|U|773
9SS5|1|D2|G|774
9SS5|1|D2|G|775
*
9SS5|1|D2|C|791
9SS5|1|D2|A|792
9SS5|1|D2|A|793
9SS5|1|D2|A|794

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BB

Large ribosomal subunit protein uL2