J3_9SS6_002

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9SS6|1|D1|C|48, 9SS6|1|D1|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1309

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|G|46
9SS6|1|D1|C|47
9SS6|1|D1|C|48
9SS6|1|D1|U|49
9SS6|1|D1|A|50
9SS6|1|D1|A|51
9SS6|1|D1|C|52
*
9SS6|1|D1|G|359
9SS6|1|D1|G|360
9SS6|1|D1|G|361
9SS6|1|D1|G|362
9SS6|1|D1|A|363
9SS6|1|D1|A|364
9SS6|1|D1|U|365
9SS6|1|D1|A|366
9SS6|1|D1|U|367
*
9SS6|1|D1|A|393
9SS6|1|D1|G|394
9SS6|1|D1|C|395

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain AO

Small ribosomal subunit protein bS16