J3_9SS6_008

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_008 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.2359

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D1|U|943
9SS6|1|D1|G|944
9SS6|1|D1|G|945
9SS6|1|D1|A|946
*
9SS6|1|D1|U|1235
9SS6|1|D1|A|1236
9SS6|1|D1|C|1237
*
9SS6|1|D1|G|1337
9SS6|1|D1|G|1338
9SS6|1|D1|A|1339
9SS6|1|D1|A|1340

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9

Chain AL

Small ribosomal subunit protein uS13