J3_9SS6_012

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

9SS6|1|D1|U|1025

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D1|G|1003
9SS6|1|D1|A|1004
9SS6|1|D1|A|1005
9SS6|1|D1|G|1006
*
9SS6|1|D1|U|1023
9SS6|1|D1|G|1024
9SS6|1|D1|U|1025
9SS6|1|D1|G|1026
9SS6|1|D1|C|1027
9SS6|1|D1|C|1028
*
9SS6|1|D1|G|1033
9SS6|1|D1|G|1034
9SS6|1|D1|A|1035
9SS6|1|D1|A|1036
9SS6|1|D1|C|1037

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AM

Small ribosomal subunit protein uS14