J3_9SS6_028

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|U|1344
9SS6|1|D2|C|1345
9SS6|1|D2|G|1346
9SS6|1|D2|A|1347
9SS6|1|D2|C|1348
9SS6|1|D2|C|1349
*
9SS6|1|D2|G|1382
9SS6|1|D2|A|1383
9SS6|1|D2|A|1384
9SS6|1|D2|A|1385
*
9SS6|1|D2|U|1402
9SS6|1|D2|A|1403

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BW

Large ribosomal subunit protein uL23