J3_9SS6_035

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9SS6|1|D2|U|2833, 9SS6|1|D2|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|G|2812
9SS6|1|D2|A|2813
9SS6|1|D2|A|2814
9SS6|1|D2|C|2815
*
9SS6|1|D2|G|2831
9SS6|1|D2|U|2832
9SS6|1|D2|U|2833
9SS6|1|D2|G|2834
9SS6|1|D2|A|2835
9SS6|1|D2|U|2836
*
9SS6|1|D2|A|2882
9SS6|1|D2|A|2883
9SS6|1|D2|U|2884
9SS6|1|D2|G|2885
9SS6|1|D2|A|2886
9SS6|1|D2|A|2887
9SS6|1|D2|C|2888

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BC

50S ribosomal protein L3

Chain BQ

Large ribosomal subunit protein bL17