J3_9SS6_036

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

9SS6|1|D3|U|14, 9SS6|1|D3|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D3|G|10
9SS6|1|D3|C|11
9SS6|1|D3|C|12
9SS6|1|D3|G|13
9SS6|1|D3|U|14
9SS6|1|D3|A|15
9SS6|1|D3|G|16
*
9SS6|1|D3|C|68
9SS6|1|D3|G|69
9SS6|1|D3|C|70
*
9SS6|1|D3|G|106
9SS6|1|D3|G|107
9SS6|1|D3|A|108
9SS6|1|D3|A|109
9SS6|1|D3|C|110

Current chains

Chain D3

5S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain BR

Large ribosomal subunit protein uL18

Chain BY

Large ribosomal subunit protein bL25

Chain D2

Large subunit ribosomal RNA; LSU rRNA