J3_9T0Y_021
3D structure
- PDB id
- 9T0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome from delta-9 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.87 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9T0Y|1|a|U|72, 9T0Y|1|a|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T0Y_021 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1578
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9T0Y|1|a|A|56
9T0Y|1|a|C|57
*
9T0Y|1|a|G|70
9T0Y|1|a|A|71
9T0Y|1|a|U|72
9T0Y|1|a|A|73
9T0Y|1|a|A|74
9T0Y|1|a|G|75
9T0Y|1|a|C|76
*
9T0Y|1|a|G|110
9T0Y|1|a|A|111
9T0Y|1|a|U|112
9T0Y|1|a|U|113
9T0Y|1|a|U|114
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- Large ribosomal subunit protein uL23
- Chain x
- Large ribosomal subunit protein uL29
Coloring options: