J3_9T5X_018

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

9T5X|1|a|A|504, 9T5X|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T5X_018 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.2326

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.3

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9T5X|1|a|G|30
9T5X|1|a|C|31
*
9T5X|1|a|G|474
9T5X|1|a|C|475
9T5X|1|a|G|476
9T5X|1|a|A|477
9T5X|1|a|A|478
9T5X|1|a|A|479
9T5X|1|a|A|480
9T5X|1|a|G|481
9T5X|1|a|A|482
9T5X|1|a|A|483
9T5X|1|a|C|484
*
9T5X|1|a|G|496
9T5X|1|a|A|497
9T5X|1|a|G|498
9T5X|1|a|U|499
9T5X|1|a|G|500
9T5X|1|a|A|501
9T5X|1|a|A|502
9T5X|1|a|A|503
9T5X|1|a|A|504
9T5X|1|a|A|505
9T5X|1|a|G|506
9T5X|1|a|A|507
9T5X|1|a|A|508
9T5X|1|a|C|509
9T5X|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Protein translocase subunit SecY

Chain V

NADH-quinone oxidoreductase subunit K

Chain p

Large ribosomal subunit protein bL20

Chain r

Large ribosomal subunit protein uL22

Chain t

Large ribosomal subunit protein uL24