J3_9T6M_002

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9T6M|1|A|C|48, 9T6M|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T6M_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1412

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9T6M|1|A|G|46
9T6M|1|A|C|47
9T6M|1|A|C|48
9T6M|1|A|U|49
9T6M|1|A|A|50
9T6M|1|A|A|51
9T6M|1|A|C|52
*
9T6M|1|A|G|359
9T6M|1|A|G|360
9T6M|1|A|G|361
9T6M|1|A|G|362
9T6M|1|A|A|363
9T6M|1|A|A|364
9T6M|1|A|U|365
9T6M|1|A|A|366
9T6M|1|A|U|367
*
9T6M|1|A|A|393
9T6M|1|A|G|394
9T6M|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16