J3_9T7H_005
3D structure
- PDB id
- 9T7H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GC*GAUAAGC*GAUUC
- Length
- 14 nucleotides
- Bulged bases
- 9T7H|1|1|U|186, 9T7H|1|1|A|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T7H_005 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0661
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9T7H|1|1|G|170
9T7H|1|1|C|171
*
9T7H|1|1|G|184
9T7H|1|1|A|185
9T7H|1|1|U|186
9T7H|1|1|A|187
9T7H|1|1|A|188
9T7H|1|1|G|189
9T7H|1|1|C|190
*
9T7H|1|1|G|223
9T7H|1|1|A|224
9T7H|1|1|U|225
9T7H|1|1|U|226
9T7H|1|1|C|227
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BT
- Large ribosomal subunit protein uL23
- Chain BW
- Large ribosomal subunit protein uL29
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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