J3_9T7H_010
3D structure
- PDB id
- 9T7H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CUUAGACAGCGGGGA*UUUAAAGAGUG*CUCACCCGUCGAG
- Length
- 39 nucleotides
- Bulged bases
- 9T7H|1|1|U|1300, 9T7H|1|1|G|1308, 9T7H|1|1|A|1343, 9T7H|1|1|G|1362, 9T7H|1|1|U|1363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9T7H|1|1|C|1298
9T7H|1|1|U|1299
9T7H|1|1|U|1300
9T7H|1|1|A|1301
9T7H|1|1|G|1302
9T7H|1|1|A|1303
9T7H|1|1|C|1304
9T7H|1|1|A|1305
9T7H|1|1|G|1306
9T7H|1|1|C|1307
9T7H|1|1|G|1308
9T7H|1|1|G|1309
9T7H|1|1|G|1310
9T7H|1|1|G|1311
9T7H|1|1|A|1312
*
9T7H|1|1|U|1336
9T7H|1|1|U|1337
9T7H|1|1|U|1338
9T7H|1|1|A|1339
9T7H|1|1|A|1340
9T7H|1|1|A|1341
9T7H|1|1|G|1342
9T7H|1|1|A|1343
9T7H|1|1|G|1344
9T7H|1|1|U|1345
9T7H|1|1|G|1346
*
9T7H|1|1|C|1355
9T7H|1|1|U|1356
9T7H|1|1|C|1357
9T7H|1|1|A|1358
9T7H|1|1|C|1359
9T7H|1|1|C|1360
9T7H|1|1|C|1361
9T7H|1|1|G|1362
9T7H|1|1|U|1363
9T7H|1|1|C|1364
9T7H|1|1|G|1365
9T7H|1|1|A|1366
9T7H|1|1|G|1367
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BN
- Large ribosomal subunit protein uL16
- Chain Bl
- Large ribosomal subunit protein eL20
Coloring options: