J3_9T7H_014

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUG*CAAGC*GAAUUCC

Length

16 nucleotides

Bulged bases

9T7H|1|1|U|1857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T7H|1|1|G|1677
9T7H|1|1|G|1678
9T7H|1|1|U|1679
9T7H|1|1|G|1680
*
9T7H|1|1|C|1689
9T7H|1|1|A|1690
9T7H|1|1|A|1691
9T7H|1|1|G|1692
9T7H|1|1|C|1693
*
9T7H|1|1|G|1853
9T7H|1|1|A|1854
9T7H|1|1|A|1855
9T7H|1|1|U|1856
9T7H|1|1|U|1857
9T7H|1|1|C|1858
9T7H|1|1|C|1859

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B5

Large ribosomal subunit protein eL14

Chain Bd

Large ribosomal subunit protein eL34