J3_9T8R_001

3D structure

PDB id

9T8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain, PTC class 7

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

ACC*GGA(H2U)AACAG*CCU

Length

15 nucleotides

Bulged bases

9T8R|1|a|A|2448, 9T8R|1|a|H2U|2449

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T8R|1|a|A|2062
9T8R|1|a|C|2063
9T8R|1|a|C|2064
*
9T8R|1|a|G|2446
9T8R|1|a|G|2447
9T8R|1|a|A|2448
9T8R|1|a|H2U|2449
9T8R|1|a|A|2450
9T8R|1|a|A|2451
9T8R|1|a|C|2452
9T8R|1|a|A|2453
9T8R|1|a|G|2454
*
9T8R|1|a|C|2498
9T8R|1|a|C|2499
9T8R|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3

Chain k

Large ribosomal subunit protein uL15

Chain l

Large ribosomal subunit protein uL16