J3_9TEX_023

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9TEX|1|a|U|686, 9TEX|1|a|A|792, 9TEX|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEX_023 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1682

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

9TEX|1|a|U|683
9TEX|1|a|G|684
9TEX|1|a|A|685
9TEX|1|a|U|686
9TEX|1|a|C|687
9TEX|1|a|U|688
9TEX|1|a|A|689
*
9TEX|1|a|U|773
9TEX|1|a|G|774
9TEX|1|a|G|775
*
9TEX|1|a|C|791
9TEX|1|a|A|792
9TEX|1|a|A|793
9TEX|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain e

Large ribosomal subunit protein uL4