J3_9TI6_021
3D structure
- PDB id
- 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9TI6|1|a|C|49, 9TI6|1|a|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TI6_021 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1217
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9TI6|1|a|G|47
9TI6|1|a|C|48
9TI6|1|a|C|49
9TI6|1|a|U|50
9TI6|1|a|A|51
9TI6|1|a|A|52
9TI6|1|a|U|53
*
9TI6|1|a|A|367
9TI6|1|a|G|368
9TI6|1|a|G|369
9TI6|1|a|G|370
9TI6|1|a|A|371
9TI6|1|a|A|372
9TI6|1|a|U|373
9TI6|1|a|C|374
9TI6|1|a|U|375
*
9TI6|1|a|A|401
9TI6|1|a|G|402
9TI6|1|a|C|403
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S16
Coloring options: