J3_9TI7_017

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI7_017 not in the Motif Atlas

Geometric match to J3_9DFE_018

Geometric discrepancy: 0.388

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9TI7|1|A|C|2816
9TI7|1|A|A|2817
*
9TI7|1|A|U|2826
9TI7|1|A|A|2827
9TI7|1|A|U|2828
9TI7|1|A|A|2829
9TI7|1|A|A|2830
9TI7|1|A|G|2831
*
9TI7|1|A|C|2909
9TI7|1|A|G|2910
9TI7|1|A|A|2911
9TI7|1|A|A|2912
9TI7|1|A|G|2913

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3