J3_9TI7_021

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

9TI7|1|a|C|49, 9TI7|1|a|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI7_021 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1341

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9TI7|1|a|G|47
9TI7|1|a|C|48
9TI7|1|a|C|49
9TI7|1|a|U|50
9TI7|1|a|A|51
9TI7|1|a|A|52
9TI7|1|a|U|53
*
9TI7|1|a|A|367
9TI7|1|a|G|368
9TI7|1|a|G|369
9TI7|1|a|G|370
9TI7|1|a|A|371
9TI7|1|a|A|372
9TI7|1|a|U|373
9TI7|1|a|C|374
9TI7|1|a|U|375
*
9TI7|1|a|A|401
9TI7|1|a|G|402
9TI7|1|a|C|403

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16