J3_9TI8_001

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI8_001 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0652

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9TI8|1|A|G|30
9TI8|1|A|C|31
*
9TI8|1|A|G|520
9TI8|1|A|U|521
9TI8|1|A|G|522
9TI8|1|A|A|523
9TI8|1|A|A|524
9TI8|1|A|A|525
9TI8|1|A|A|526
9TI8|1|A|G|527
*
9TI8|1|A|C|554
9TI8|1|A|C|555

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain X

50S ribosomal protein L24