J3_9TI8_015

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

GCU*ACUUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

9TI8|1|A|A|2415, 9TI8|1|A|U|2417, 9TI8|1|A|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI8_015 not in the Motif Atlas

Homologous match to J3_7A0S_020

Geometric discrepancy: 0.1341

The information below is about J3_7A0S_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.3

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9TI8|1|A|G|2309
9TI8|1|A|C|2310
9TI8|1|A|U|2311
*
9TI8|1|A|A|2411
9TI8|1|A|C|2412
9TI8|1|A|U|2413
9TI8|1|A|U|2414
9TI8|1|A|A|2415
9TI8|1|A|G|2416
9TI8|1|A|U|2417
9TI8|1|A|G|2418
9TI8|1|A|A|2419
9TI8|1|A|U|2420
9TI8|1|A|C|2421
9TI8|1|A|C|2422
*
9TI8|1|A|G|2448
9TI8|1|A|C|2449
9TI8|1|A|U|2450
9TI8|1|A|C|2451
9TI8|1|A|A|2452
9TI8|1|A|A|2453
9TI8|1|A|C|2454

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL33A

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15

Chain Z

50S ribosomal protein L27