J3_9TKN_006

3D structure

PDB id

9TKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 and IF1 bound (30S PIC-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9TKN|1|D1|U|871, 9TKN|1|D1|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKN|1|D1|C|826
9TKN|1|D1|U|827
9TKN|1|D1|U|828
9TKN|1|D1|G|829
*
9TKN|1|D1|C|857
9TKN|1|D1|G|858
9TKN|1|D1|G|859
9TKN|1|D1|A|860
9TKN|1|D1|G|861
*
9TKN|1|D1|C|868
9TKN|1|D1|G|869
9TKN|1|D1|U|870
9TKN|1|D1|U|871
9TKN|1|D1|A|872
9TKN|1|D1|A|873
9TKN|1|D1|G|874

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AG

Small ribosomal subunit protein uS8

Chain AT

Small ribosomal subunit protein bS21