J3_9TKP_031

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

9TKP|1|D2|A|2388, 9TKP|1|D2|U|2390, 9TKP|1|D2|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|G|2282
9TKP|1|D2|C|2283
9TKP|1|D2|A|2284
*
9TKP|1|D2|U|2384
9TKP|1|D2|C|2385
9TKP|1|D2|A|2386
9TKP|1|D2|U|2387
9TKP|1|D2|A|2388
9TKP|1|D2|G|2389
9TKP|1|D2|U|2390
9TKP|1|D2|G|2391
9TKP|1|D2|A|2392
9TKP|1|D2|U|2393
9TKP|1|D2|C|2394
9TKP|1|D2|C|2395
*
9TKP|1|D2|G|2421
9TKP|1|D2|C|2422
9TKP|1|D2|U|2423
9TKP|1|D2|C|2424
9TKP|1|D2|A|2425
9TKP|1|D2|A|2426
9TKP|1|D2|C|2427

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain B6

Large ribosomal subunit protein bL33

Chain B8

Large ribosomal subunit protein bL35

Chain BO

Large ribosomal subunit protein uL15