J3_9TKP_035

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9TKP|1|D2|U|2833, 9TKP|1|D2|A|2835, 9TKP|1|D2|U|2884, 9TKP|1|D2|G|2885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|G|2812
9TKP|1|D2|A|2813
9TKP|1|D2|A|2814
9TKP|1|D2|C|2815
*
9TKP|1|D2|G|2831
9TKP|1|D2|U|2832
9TKP|1|D2|U|2833
9TKP|1|D2|G|2834
9TKP|1|D2|A|2835
9TKP|1|D2|U|2836
*
9TKP|1|D2|A|2882
9TKP|1|D2|A|2883
9TKP|1|D2|U|2884
9TKP|1|D2|G|2885
9TKP|1|D2|A|2886
9TKP|1|D2|A|2887
9TKP|1|D2|C|2888

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BC

50S ribosomal protein L3

Chain BQ

Large ribosomal subunit protein bL17