J3_9TKQ_019
3D structure
- PDB id
- 9TKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9TKQ|1|D2|U|34, 9TKQ|1|D2|U|448, 9TKQ|1|D2|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TKQ|1|D2|C|32
9TKQ|1|D2|C|33
9TKQ|1|D2|U|34
9TKQ|1|D2|G|35
*
9TKQ|1|D2|C|445
9TKQ|1|D2|G|446
9TKQ|1|D2|A|447
9TKQ|1|D2|U|448
9TKQ|1|D2|A|449
9TKQ|1|D2|G|450
9TKQ|1|D2|U|451
9TKQ|1|D2|G|452
9TKQ|1|D2|A|453
9TKQ|1|D2|A|454
9TKQ|1|D2|C|455
9TKQ|1|D2|C|456
9TKQ|1|D2|A|457
9TKQ|1|D2|G|458
9TKQ|1|D2|U|459
9TKQ|1|D2|A|460
9TKQ|1|D2|C|461
*
9TKQ|1|D2|G|468
9TKQ|1|D2|G|469
9TKQ|1|D2|A|470
9TKQ|1|D2|A|471
9TKQ|1|D2|A|472
9TKQ|1|D2|G|473
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- Large ribosomal subunit protein bL34
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BW
- Large ribosomal subunit protein uL23
Coloring options: