J3_9TKQ_021

3D structure

PDB id

9TKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9TKQ|1|D2|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKQ|1|D2|G|297
9TKQ|1|D2|G|298
9TKQ|1|D2|A|299
9TKQ|1|D2|A|300
9TKQ|1|D2|G|301
*
9TKQ|1|D2|C|316
9TKQ|1|D2|G|317
9TKQ|1|D2|C|318
9TKQ|1|D2|G|319
9TKQ|1|D2|A|320
9TKQ|1|D2|U|321
9TKQ|1|D2|A|322
9TKQ|1|D2|C|323
9TKQ|1|D2|A|324
9TKQ|1|D2|G|325
*
9TKQ|1|D2|C|337
9TKQ|1|D2|G|338
9TKQ|1|D2|U|339
9TKQ|1|D2|A|340
9TKQ|1|D2|C|341

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BX

Large ribosomal subunit protein uL24